There is a huge difference, when things like algae-blocking or screen-waviness occur, which re-directs all the flow once a little growth occurs.
I'm not against horizontal... I posted builds of them, and we even made the worlds first horizontal nano scrubber right here in the office. But I have to make sure that the average person who builds a scrubber will have strong filtering and good success with their display. So I only recommend what get's reported to me as successful. The horizontal designs are touchy, and over half of the time, they don't work at all due to the operator. And, they take up the whole top of the sump. Verticals, however, work every time as long as you can cut the slot in the pipe (I don't recommend drilled holes). Remember, hundreds of people have reported their builds on my threads alone, and I hear all the stories. Horizontals just have much more problems (for the average person) than verticals. It is possible to get a horizontal working properly, but it takes more skill, and more coverage of the sump.
As for success of one vs. the other, you will never know unless you build one, use it for a year, then remove it and use the other for a year. If you only build a horizontal, and your display algae or nutrients never go away, then you won't know if a vertical would have done better (for the SAME gph, watts, and space). The purpose of my reporting the results of other builders is to show what happened to hundreds of others when THEY tried it. Many have tried horizontals, but only a few kept them. Building and operating a horizontal simply leaves less room for errors.